Reconciling landscape and local views of aquatic communities: lessons from Michigan trout streams

1. Rapidly advancing geographical information systems (GIS) technologies are forcing a careful evaluation of the roles and biases of landscape and traditional site-based perspectives on assessments of aquatic communities. Viewing the world at very different scales can lead to seeming contradictions about the nature of specific ecological systems. In the case of Michigan trout streams, landscape analyses suggest a predictable community shaped by large-scale patterns in hydrology and geology. Most site-based studies, however, suggest these communities are highly variable in structure over time, and are strongly shaped by site-specific physical and biological dynamics. As the real world is comprised of processes operating both at local and landscape scales, an analytical framework for integrating these paradigms is desirable.
2. Decomposition of variances by factorial ANOVA into time, space and time–space interaction terms can provide a conceptual and analytical model for integrating processes operating at landscape and local scales. Using this approach, long-term data sets were examined for three insects and two fishes common in Michigan trout streams. Each taxon had a unique variance structure, and the observed variance structure was highly dependent upon sample size.
3. Both spatially extensive designs with little sampling over time (typical of many GIS studies) and temporally extensive designs with little or no spatial sampling (typical of population and community studies), are biased in terms of their view of the relative importance of local and landscape factors. The necessary, but in many cases costly, solution is to develop and analyse data sets that are both spatially and temporally extensive.     

Soil-surface carbon dioxide efflux and microbial biomass in relation to tree density 13 years after a stand replacing fire in a lodgepole pine ecosystem

The effects of fire on soil‐surface carbon dioxide (CO₂) efflux, F_S, and microbial biomass carbon, C_mic, were studied in a wildland setting by examining 13‐year‐old postfire stands of lodgepole pine differing in tree density (< 500 to > 500 000 trees ha^?1) in Yellowstone National Park (YNP). In addition, young stands were compared to mature lodgepole pine stands (～110‐year‐old) in order to estimate ecosystem recovery 13 years after a stand replacing fire. Growing season F_S increased with tree density in young stands (1.0 µmol CO₂ m^?2 s^?1 in low‐density stands, 1.8 µmol CO₂ m^?2 s^?1 in moderate‐density stands and 2.1 µmol CO₂ m^?2 s^?1 in high‐density stands) and with stand age (2.7 µmol CO₂ m^?2 s^?1 in mature stands). Microbial biomass carbon in young stands did not differ with tree density and ranged from 0.2 to 0.5 mg C g^?1 dry soil over the growing season; C_mic was significantly greater in mature stands (0.5–0.8 mg C g^?1 dry soil). Soil‐surface CO₂ efflux in young stands was correlated with biotic variables (above‐ground, below‐ground and microbial biomass), but not with abiotic variables (litter and mineral soil C and N content, bulk density and soil texture). Microbial biomass carbon was correlated with below‐ground plant biomass and not with soil carbon and nitrogen, indicating that plant activity controls not only root respiration, but C_mic pools and overall F_S rates as well. These findings support recent studies that have demonstrated the prevailing importance of plants in controlling rates of F_S and suggest that decomposition of older, recalcitrant soil C pools in this ecosystem is relatively unimportant 13 years after a stand replacing fire. Our results also indicate that realistic predictions and modeling of terrestrial C cycling must account for the variability in tree density and stand age that exists across the landscape as a result of natural disturbances.     

Physiological and Molecular Basis of Susceptibility and Tolerance of Rice Plants to Complete Submergence

Rice plants are much damaged by several days of total submergence.The effect can be a serious problem for rice farmers in therainfed lowlands of Asia, and runs contrary to a widespreadbelief amongst plant biologists that rice is highly tolerantof submergence. This article assesses the characteristics ofthe underwater environment that may damage rice plants, examinesvarious physiological mechanisms of injury, and reviews recentprogress achieved using linkage mapping to locate quantitativetraits loci (QTL) for tolerance inherited from a submergence-tolerantcultivar FR13A. Progress towards identifying the gene(s) involvedthrough physical mapping of a dominant tolerance locus on chromosome9 is also summarized. Available physiological evidence pointsaway from responses to oxygen shortage as being inextricablyinvolved in submergence injury. An imbalance between productionand consumption of assimilates is seen as being especially harmful,and is exacerbated by strongly accelerated leaf extension andleaf senescence that are ethylene-mediated and largely absentfrom FR13A and related cultivars. DNA markers for a major QTLfor tolerance are shown to be potentially useful in breedingprogrammes designed to improve submergence tolerance.     

How New Guinea rainforest flower resources vary in time and space: Implications for nectarivorous birds

Abstract Variability in spatial and temporal patterning of flowering by populations of rainforest trees fed upon by honeyeaters and flower-visiting parrots was studied for 2 years in lowland tropical hill forest in Papua New Guinea. All 2200 trees in a 3 ha plot were tagged, identified, mapped and monitored monthly. Of 274 tree species present, 86 flowered during the course of the study; during any given month, approximately 20% of the species flowering that month were visited by nectarivorous birds. Results showed that overall flower resources (total number of species, and number of bird-pollinated species, individuals and flowers) fluctuated during the year, decreased during the dry season and increased during the wet season. In addition, there was a wide range of temporal variation within and among tree species in length and timing of flowering period, percentage of each conspecific population flowering from year to year, and degree of synchrony among flowering conspecifics. Spatial dispersion of tree populations also varied, from clumps to scattered single individuals. Resident bird species were correlated with synchronously flowering trees, whereas nomadic bird species were correlated with asynchronously flowering trees. Resident birds were also associated with smaller blooming displays per tree, whereas nomadic birds were associated with trees that bloomed massively. There was no correlation between avian nomadism and spatial dispersion of tree populations. Thus nomadic birds seem to range in search of rich but unpredictable resources; resident birds may rely more on predictable, but smaller resources.     

MEMBRANE LIFTING TECHNIQUE FOR RAPID DETECTION OF ESCHERICHIA COLI 0157:H7 IN INOCULATED GROUND MEATS

A membrane lifting technique was developed for direct rapid detection of Escherichia coli 0157:H7 in inoculated ground meats. Duplicate groups of 2 meatballs were inoculated with volumes of 0.1-ml of a serial dilution (1:10) of E. coli 0157:H7 or a mixed culture containing one strain of E. coli 0157:H7 and a non-0157:H7E. coli serotype (E. coli ATCC 25922). Each meatball was sampled by sandwiching with 2 pieces of nitrocellulose membranes and pressing against each other to the center of the meatball. The membranes were in contact with the meats for 10 min to lift the bacteria. The membranes were removed and incubated on MacConkey-sorbitol agar plates with the meat contact side up. After 18 h incubation at 37C, an immunostain was performed directly on the membranes for detection of the presence or absence of E. coli 0157:H7. This method was found to be sensitive enough to detect as few as 1 to 2 cells of E. coli 0157:H7 inoculated on surfaces of 18-g meatballs. This method might be used as a rapid presumptive test for E. coli 0157:H7.     

Primary Structure and Phylogenetic Relationships of Glyceraldehyde-3-Phosphate Dehydrogenase Genes of Free-Living and Parasitic Diplomonad Flagellates

ABSTRACT. Complete nucleotide sequences have been established for two genes (gap1 and gap2) coding for glyceraldehyde-3-phosphate dehydrogenase (GAPDH, EC 1.2.1.12) homologs in the diplomonad Giardia lamblia. In addition, almost complete sequences of the GAPDH open reading frames were obtained from PCR products for two free-living diplomonad species, Trepomonas agilis and Hexamita inflata, and a parasite of Atlantic salmon, an as yet unnamed species with morphological affinities to Spironucleus. Giardia lamblia gap 1 and the genes from the three other diplomonad species show high similarity to each other and to other glycolytic GAPDH genes. All amino-acyl residues known to be highly conserved in this enzyme are also conserved in these sequences. Giardia lamblia gap2 gene is more divergent and its putative translation reveals the presence of a cysteine and serine-rich insertion resembling a metal binding finger. This motif has not yet been noted in other GAPDH molecules. All sequences contain an S-loop signature with characteristics close to those of eukaryotes. In phylogenetic reconstructions based on the derived amino acid sequences with neighborjoining, parsimony and maximum-likelihood methods the four typical GAPDH sequences of diplomonads cluster into a single clade. Within this clade, G. lamblia gap1 shares a common ancestor with the rest of the genes. The latter are more closely related to each other, indicating an early separation of the lineage leading to the genus Giardia from the lineage encompassing the morphologically less differentiated genera, Trepomonas, Hexamita and that of the unnamed species. This result is discordant with the orthogonal evolution of diplomonads suggested on the basis of comparative morphology. In neighbor-joining reconstructions G. lamblia gap2 occupies a variable position, due to its great divergence. In parsimony and maximum likelihood analysis however, it shares a most recent common ancestor with the typical G. lamblia gap1 gene, suggesting that it diverged after the separation of the Giardia lineage. The position of the diplomonad clade in broader phylogenetic reconstructions is firmly within the typical cytosolic glycolytic representatives of GAPDH of eukaryotes.     

Biofilm development and invertebrate colonization of wood in four New Zealand streams of contrasting pH

1. Biofilm development and activity on wood substrata (Nothofagus menziesii) were examined at four forested sites in a South Island, New Zealand, river catchment over a period of 6 months. Two of the sites had brown waters and mean pH of 3.7 and 4.5, whereas the other two had clear waters and mean pH of 6.3 and 6.8. 2. Fungi and other filamentous heterotrophs were the dominant colonizers of wood at all sites; few algal cells were present. Incorporation of ¹⁴C-glucose by biofilms was greatest in all four streams after 3 months, whereas endocellulase activity fluctuated over time and temporal patterns differed among streams. 3. No clear relationship was found between the incorporation of ¹⁴C-glucose or endocellulase activity of biofilms and pH, although at one near-neutral pH site ¹⁴C-glucose uptake increased in response to nutrient (N + P) additions. 4. After 6 months, incorporation of ¹⁴C-glucose and endocellulase activity of biofilms on Pinus radiata dowels buried vertically in the stream beds did not differ at depths of 3–9 cm and 19–25 cm in each stream. 5. Radiotracer experiments with a grazing amphipod (Paraleptamphopus sp.) demonstrated that biofilms on wood from all four sites could be ingested and at least partially assimilated. Chironomid larvae and harpacricoid copepods were the most abundant invertebrates colonizing wood substrata at all sites. Different chironomid species dominated at acidic and near-neutral pH sites. 6. Overall, our findings provide little support for the hypothesis that microbial activity on organic substrata is necessarily lower in streams of low pH.     

The postcranial skeleton of the Devonian tetrapod Tulerpeton curtum Lebedev

Postcranial remains of the Russian Late Devonian tetrapod Tulerpeton include the hexadactylous fore limb, hind limb, anocleithral pectoral girdle, squamation, and associated disarticulated postcranial bones. A cladistic analysis indicates that Tulerpeton is a reptiliomorph stem-group amniote and the earliest known crown-group tetrapod: Acanthostega and Ichthyostega are successively more derived plesion stem-group tetrapods and do not consititute a monophyletic ichthyostegalian radiation. Previous analyses suggesting a profound split in tetrapod phylogeny are thereby corroborated, and likewise the interpretation of Westlothiana as a stem-group amniote. The divergence of reptiliomorphs from batrachomorphs occurred before the Devonian-Carboniferous boundary. Tulerpeton originates from an entirely aquatic environment with a diverse fish fauna. The morphologies of its limbs and those of Devonian stem-tetrapods suggest that dactyly predates the elaboration of the carpus and tarsus, and that Polydactyly persisted after the evolutionary divergence of the principal lineages of living tetrapods. The apparent absence of a branchial lamina and gill skeleton suggests that Tulerpeton was primarily air-breathing, whereas contemporary stem-group tetrapods and more recent batrachomorphs retained greater emphasis on gill-breathing.     

The encrustation of fossil and recent sea-urchin tests: ecological and taphonomic significance

A comparison of fossil ( Echitwlampas sp. from the Lower Miocene Zogelsdorf Formation, Austria) and Recent ( Schizaster canaliferus from the northern Adriatic Sea) irregular sea-urchin tests shows that, upon their death, burrowing echinoids can serve as a substrate for a dense epigrowth. Size, shape, stable orientation, and surface residence-time were identified as key factors governing encrustation. The encrusters on fossil Echinolampas were bryozoans, serpulid polychaetes, barnacles, and coralline algae, while the recent material was initially encrusted by serpulids and hydrozoan colonies, and ultimately covered by the full range of sessile, hemi-sessile, and vagile species characterizing the benthic community in the Adriatic. In Echinolampas , epigrowth was more abundant on the lower (oral) surface; this specific distribution was echoed in S. canaliferus , where epigrowth started on the bottom side and grew upward. This indicates that the tests have a stable orientation and a surface residence-time long enough to allow intense encrustation. A taphonomic model is developed, and the role of encrustation on such special substrates for overall community structure is discussed. The Recent/fossil comparison provides new insights for both fields of study: the recent material indicates the role of soft-bodied faunas as well as the complexity of small-scaled ecological processes; the fossil material reflects many of the above phenomena and adds important taphonomic details on the fate of encrusted biogenic structures and on encruster growth patterns and distributions.